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GKLOMLI: a link prediction model for inferring miRNA–lncRNA interactions by using Gaussian kernel-based method on network profile and linear optimization algorithm.

• Authors : Wong, Leon^1,2 (AUTHOR); Wang, Lei^1,3 (AUTHOR) ; You, Zhu-Hong⁴ (AUTHOR)

• Source: BMC Bioinformatics. 5/8/2023, Vol. 24 Issue 1, p1-14. 14p.

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scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data.

• Authors : Nassiri, Isar; Fairfax, Benjamin; Lee, Angela

Subjects: QUALITY control; RNA sequencing; GENE expression profiling

• Source: BMC Genomics; 7/6/2023, Vol. 24 Issue 1, p1-9, 9p

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DM-MOGA: a multi-objective optimization genetic algorithm for identifying disease modules of non-small cell lung cancer.

• Authors : Shang, Junliang¹ (AUTHOR); Zhu, Xuhui¹ (AUTHOR); Sun, Yan¹ (AUTHOR)

• Source: BMC Bioinformatics. 1/9/2023, Vol. 24 Issue 1, p1-19. 19p.

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Structured feature selection using coordinate descent optimization.

• Authors : Ghalwash, Mohamed F.^1,2 ; Xi Hang Cao¹; Stojkovic, Ivan^1,3

• Source: BMC Bioinformatics. 4/8/2016, Vol. 17, p1-14. 14p. 3 Diagrams, 4 Charts, 6 Graphs.

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Combinatorial optimization of synthetic operons for the microbial production of p-coumaryl alcohol with Escherichia coli.

• Authors : van Summeren-Wesenhagen, Philana V.¹; Voges, Raphael¹; Dennig, Alexander²

Subjects: *BIOTECHNOLOGICAL microorganisms; *CELL metabolism; *ESCHERICHIA coli

• Source: Microbial Cell Factories. 2015, Vol. 14 Issue 1, p1-10. 10p. 2 Color Photographs, 1 Black and White Photograph, 1 Chart, 1 Graph.

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Codon pair optimization (CPO): a software tool for synthetic gene design based on codon pair bias to improve the expression of recombinant proteins in Pichia pastoris.

• Authors : Huang Y; Engineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, Fuzhou, 350007, China. .; Provincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, College of Life Sciences, Fujian Normal University, Fuzhou, 350007, China. .

Subjects: Gene Expression* ; Software*; Codon/Codon/Codon/*genetics Komagataella pastoris

• Source: Microbial cell factories [Microb Cell Fact] 2021 Nov 04; Vol. 20 (1), pp. 209. Date of Electronic Publication: 2021 Nov 04.Publisher: BioMed Central Country of Publication: England NLM ID: 101139812 Publication Model: Electronic Cited Medium:

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Assessing optimal: inequalities in codon optimization algorithms.

• Authors : Ranaghan MJ; Center for the Development of Therapeutics, The Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA, 02142, USA. .; Li JJ

Subjects: Gene Expression*; Codon/Codon/Codon/*analysis ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

• Source: BMC biology [BMC Biol] 2021 Feb 19; Vol. 19 (1), pp. 36. Date of Electronic Publication: 2021 Feb 19.Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium:

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An integer optimization algorithm for robust identification of non-linear gene regulatory networks.

• Authors : Chemmangattuvalappil, Nishanth¹; Task, Keith¹; Banerjee, Ipsita¹

• Source: BMC Systems Biology. 2012, Vol. 6 Issue 1, p119-132. 14p. 5 Diagrams, 6 Charts, 3 Graphs.

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A new prokaryotic expression vector for the expression of antimicrobial peptide abaecin using SUMO fusion tag.

• Authors : Kim DS; Department of Biological Sciences, Andong National University, Andong, South Korea.; Kim SW

Subjects: Gene Expression*; Anti-Infective Agents/Anti-Infective Agents/Anti-Infective Agents/*chemical synthesis ; Antimicrobial Cationic Peptides/Antimicrobial Cationic Peptides/Antimicrobial Cationic Peptides/*chemical synthesis

• Source: BMC biotechnology [BMC Biotechnol] 2019 Feb 15; Vol. 19 (1), pp. 13. Date of Electronic Publication: 2019 Feb 15.Publisher: BioMed Central Country of Publication: England NLM ID: 101088663 Publication Model: Electronic Cited Medium:

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Efficient production of extracellular pullulanase in Bacillus subtilis ATCC6051 using the host strain construction and promoter optimization expression system.

• Authors : Liu X; School of Biology and Biological Engineering, Guangzhou Higher Education Mega Centre, South China University of Technology, Building B6, Panyu District, Guangzhou, 510006, Guangdong, People's Republic of China.; Wang H

Subjects: Gene Expression* ; Promoter Regions, Genetic*; Bacillus subtilis/Bacillus subtilis/Bacillus subtilis/*metabolism

• Source: Microbial cell factories [Microb Cell Fact] 2018 Oct 22; Vol. 17 (1), pp. 163. Date of Electronic Publication: 2018 Oct 22.Publisher: BioMed Central Country of Publication: England NLM ID: 101139812 Publication Model: Electronic Cited Medium:

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